质粒名称: | pLEVI(408)-ColE-iLight-msfGFP |
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出品公司: | addgene |
目录编号: | 170268 |
存储实验室: | Vladislav Verkhusha |
载体骨架基本信息 |
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载体名称: | pLEVI(408)-ColE |
载体出品公司: | Y. Yang lab (East China University of Science and Technology, China) |
空载体大小: | 5347 bp |
完整质粒大小: | 7702 bp |
载体修饰: | iLight-msfGFP was inserted C-terminally in frame with LexADBD. |
载体类型: | 细胞表达 |
筛选标记: | mCherry |
载体抗性: | 大观霉素,50 μg/mL |
生长温度: | 37 ℃ |
宿主菌: | DH5a |
拷贝数: | 低拷贝 |
插入基因信息 |
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插入基因名称: | iiLight |
物种来源: | Synthetic Idiomarina sp. A28L |
插入大小: | 2355 bp |
基因突变: | I68F, H80Q, A86T, R90S S242C, E274K, R295H I360V, and L464V. |
GenBank编号 | MW890755 |
启动子: | pJ23116 |
标签/融合蛋白: | msfGFP (C terminal on insert) |
克隆方法: | 限制性内切酶 |
5’克隆位点: | SacII(未破坏) |
3’克隆位点: | SacII (未破坏) |
5’测序引物 | atgaaagcgttaacggccaggcaac |
3’测序引物 | cgtcgccgtccagctcgaccag |
文献引用方法 |
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材料和方法部分: | pLEVI(408)-ColE-iLight-msfGFP was a gift from Vladislav Verkhusha (Addgene plasmid # 170268 ; http://n2t.net/addgene:170268 ; RRID:Addgene_170268) |
参考文献部分: | Single-component near-infrared optogenetic systems for gene transcription regulation. Kaberniuk AA, Baloban M, Monakhov MV, Shcherbakova DM, Verkhusha VV. Nat Commun. 2021 Jun 23;12(1):3859. doi: 10.1038/s41467-021-24212-7. 10.1038/s41467-021-24212-7 PubMed 34162879 |
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pLEVI(408)-ColE-iLight-msfGFP载体基本信息
pLEVI(408)-ColE-iLight-msfGFP载体图谱质粒图谱和多克隆位点信息
pLEVI(408)-ColE-iLight-msfGFP载体简介
pLEVI(408)-ColE-iLight-msfGFP载体序列
LOCUS pLEVI(408)-ColE-iLight-msfGFP 7703 bp ds-DNA circular SYN 15-JUN-2021 DEFINITION Expresses LexA_DBD-iLight-msfGFP under J23116 promoter and mCherry under ColE promoter with a LexA408 operator in bacteria.. ACCESSION . VERSION . KEYWORDS pLEVI(408)-ColE-iLight-msfGFP SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 7703) TITLE Single-component near-infrared optogenetic systems for gene transcription regulation REFERENCE 2 (bases 1 to 7703) AUTHORS . TITLE Direct Submission JOURNAL Exported Jun 15, 2021 from SnapGene Server 1.1.58 http://www.biofeng.com FEATURES Location/Qualifiers source 1..7703 /organism="synthetic DNA construct" /mol_type="other DNA" CDS 1958..2677 /codon_start=1 /product="GFP variant that folds robustly even when fused to poorly folded proteins (Pedelacq et al., 2006)" /label=superfolder GFP /note="mammalian codon-optimized" /translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVRGEGEGDATNGKLTL KFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTISFKDD GTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHNVYITADKQKNGIK ANFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLL EFVTAAGITLGMDELYK" primer_bind complement(2003..2024) /label=EGFP-N /note="EGFP, reverse primer" primer_bind 2611..2632 /label=EGFP-C /note="EGFP, forward primer" terminator 2887..2933 /label=rrnB T1 terminator /note="transcription terminator T1 from the E. coli rrnB gene" primer_bind complement(2956..2974) /label=T7 Term /note="T7 terminator, reverse primer" terminator 2970..3017 /label=T7 terminator /note="transcription terminator for bacteriophage T7 RNA polymerase" CDS complement(3188..3979) /codon_start=1 /gene="aadA" /product="aminoglycoside adenylyltransferase (Murphy, 1985)" /label=SmR /note="confers resistance to spectinomycin and streptomycin" /translation="MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPH SDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAK RELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLF EALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQP VILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK" promoter complement(3980..4071) /gene="bla" /label=AmpR promoter rep_origin complement(4119..4857) /direction=LEFT /label=CloDF13 ori /note="Plasmids containing the CloDF13 (CDF) origin of replication can be propagated in E. coli cells that contain additional plasmids with compatible origins." CDS complement(5067..6149) /codon_start=1 /gene="lacI" /product="lac repressor" /label=lacI /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." /translation="MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAEL NYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGV EACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSH EDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSA MSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSC YIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPR ALADSLMQLARQVSRLESGQ" primer_bind 6111..6130 /label=LacI-R /note="LacI, reverse primer" promoter complement(6150..6227) /gene="lacI" /label=lacI promoter terminator 6453..6499 /label=rrnB T1 terminator /note="transcription terminator T1 from the E. coli rrnB gene" CDS 6675..7385 /codon_start=1 /product="monomeric derivative of DsRed fluorescent protein (Shaner et al., 2004)" /label=mCherry /note="mammalian codon-optimized" /translation="MVSKGEEDNMAIIKEFMRFKVHMEGSVNGHEFEIEGEGEGRPYEG TQTAKLKVTKGGPLPFAWDILSPQFMYGSKAYVKHPADIPDYLKLSFPEGFKWERVMNF EDGGVVTVTQDSSLQDGEFIYKVKLRGTNFPSDGPVMQKKTMGWEASSERMYPEDGALK GEIKQRLKLKDGGHYDAEVKTTYKAKKPVQLPGAYNVNIKLDITSHNEDYTIVEQYERA EGRHSTGGMDELYK" primer_bind complement(6820..6838) /label=mCherry-R /note="mCherry, reverse primer" primer_bind 7088..7107 /label=mCherry-F /note="mCherry, forward primer" terminator 7592..7638 /label=rrnB T1 terminator /note="transcription terminator T1 from the E. coli rrnB gene" ORIGIN 1 cagctagctc agtcctaggg actatgctag caaacactat aacttcctag gtattattat 61 gaaagcgtta acggccaggc aacaagaggt gtttgatctc atccgtgatc acatcagcca 121 gacaggtatg ccgccgacgc gtgcggaaat cgcgcagcgt ttggggttcc gttccgcgtc 181 ctcggctgaa gaacatctga aggcgctggc acgcaaaggc gttattgaaa ttgtttccgg 241 cgcatcacgc gggattcgtc tgttgcagga agaggaagaa gggttgccgc tggtaggtcg 301 tgtggctgcc ggtgaaccgc ggagtgctgg tggggcagca gatctgggta gtgatgatat 361 cagcaaactg attgcagcat gtgatcaaga accgattcat attccgaatg caattcagcc 421 gtttggtgca atgctgattg ttgaaaaaga tacccagcag attgtttatg caagcgcaaa 481 tagcgcagaa tatttcagcg ttgcagataa caccattcat gaactgagcg attttaaaca 541 ggccaacatt aatagcctgc tgccggaaca actgattagc ggtctgacaa gcgcaattag 601 tgaaaatgaa ccgatttggg ttgaaaccga tcgtctgagc tttctgggtt ggcgtcatga 661 aaactattac atcattgaag tggaacgcta tcatgtgcag accagcaatt ggtttgaaat 721 tcagtttcag cgtgcctttc agaaactgcg taattgcaaa acccataacg atctgattaa 781 taccctgacc cgtctgattc aagaaatcag cggttatgat cgcgtgatga tctatcaatt 841 tgatccggaa tggaatggtc gtgttattgc agaaagcgtt cgtcagctgt ttaccagcat 901 gctgaatcat cattttccgg caagcgatat tccggcacag gcacgtgcaa tgtatagcat 961 taatccgatt cgtattatcc cggatgttaa tgcagaaccg cagccgctgc acatgattca 1021 taaaccgcaa aataccgaag cagttaatct gagctgcggt gttctgcgtg cagttagccc 1081 tctgcacatg cagtatctgc gtaattttgg tgttagcgca agcaccagca ttggcatttt 1141 taacgaagat aaactgtggg gtatcgttgc atgccatcat accaaaccgc gtgcaattgg 1201 tcgtcgtatt cgtcatctgc tggttcgtac cgttgaattt gcagcagaac gtctgtggct 1261 gattcatagc cgtaatgttg aacgttatat ggttaccgtt caggcagcac gtgaacagct 1321 gagcaccacc gcagatgata aacattcaag ccatgaaatc gtgattgaac atgcagcaga 1381 ttggtgtaaa ctgtttcgtt gtgatggtgt tggttatctg cgtggagaag aactgaccac 1441 ctatggtgaa acaccggatc agaccaccat taacaaactg gttgaatggc tggaagagaa 1501 cggtaaaaaa agcctgtttt ggcatagcca catgctgaaa gaagatgcac cgggtctgct 1561 gccggatggt agccgttttg caggtctgct ggcaattccg ctgaaaagtg atgcagacct 1621 gtttagctat ctgctgctgt ttcgtgtggc acagaatgaa gttcgtacct gggcgggtaa 1681 accggaaaaa ctgagcgttg aaaccagcac tggcaccatg gtgggtccgc gtaaaagttt 1741 tgaagcatgg caggatgaag ttagcggtaa aagccagccg tggcgtaccg cacagctgta 1801 tgcagcacgt gatattgcac gtgatctgct gattgtggca gatagcatgc agctgaatct 1861 gctgaatgat cagctggcag atgcaaatga aaatctggaa aaactggcca gctttgatga 1921 tctgaccgtc gactccggtg gtggttctgg tggtggaatg gtgagcaagg gcgaggagct 1981 gttcaccggg gtggtgccca tcctggtcga gctggacggc gacgtaaacg gccacaagtt 2041 cagcgtgcgc ggcgagggcg agggcgatgc caccaacggc aagctgaccc tgaagttcat 2101 ctgcaccacc ggcaagctgc ccgtgccctg gcccaccctc gtgaccaccc tgacctacgg 2161 cgtgcagtgc ttcagccgct accccgacca catgaagcgc cacgacttct tcaagtccgc 2221 catgcccgaa ggctacgtcc aggagcgcac catcagcttc aaggacgacg gcacctacaa 2281 gacccgcgcc gaggtgaagt tcgagggcga caccctggtg aaccgcatcg agctgaaggg 2341 catcgacttc aaggaggacg gcaacatcct ggggcacaag ctggagtaca acttcaacag 2401 ccacaacgtc tatatcaccg ccgacaagca gaagaacggc atcaaggcca acttcaagat 2461 ccgccacaac gtggaggacg gcagcgtgca gctcgccgac cactaccagc agaacacccc 2521 catcggcgac ggccccgtgc tgctgcccga caaccactac ctgagcaccc agtccaagct 2581 gagcaaagat cccaacgaga aacgcgatca catggtcctg ctggagttcg tgaccgccgc 2641 cgggatcact ctcggcatgg acgagctgta caagtgagaa ttccccctgt tttggcggat 2701 gagagaagat tttcagcctg atacagatta aatcagaacg cagaagcggt ctgataaaac 2761 agaatttgcc tggcggcagt agcgcggtgg tcccacctga ccccatgccg aactcagaag 2821 tgaaacgccg tagcgccgat ggtagtgtgg ggtctcccca tgcgagagta gggaactgcc 2881 aggcatcaaa taaaacgaaa ggctcagtcg aaagactggg cctttcgttt tatctgttgt 2941 ttgctcgagc tgccaccgct gagcaataac tagcataacc ccttggggcc tctaaacggg 3001 tcttgagggg ttttttgctg aaacctcagg catttgagaa gcacacggtc acactgcttc 3061 cggtagtcaa taaaccggta aaccagcaat agacataagc ggctatttaa cgaccctgcc 3121 ctgaaccgac gaccgggtca tcgtggccgg atcttgcggc ccctcggctt gaacgaattg 3181 ttagacatta tttgccgact accttggtga tctcgccttt cacgtagtgg acaaattctt 3241 ccaactgatc tgcgcgcgag gccaagcgat cttcttcttg tccaagataa gcctgtctag 3301 cttcaagtat gacgggctga tactgggccg gcaggcgctc cattgcccag tcggcagcga 3361 catccttcgg cgcgattttg ccggttactg cgctgtacca aatgcgggac aacgtaagca 3421 ctacatttcg ctcatcgcca gcccagtcgg gcggcgagtt ccatagcgtt aaggtttcat 3481 ttagcgcctc aaatagatcc tgttcaggaa ccggatcaaa gagttcctcc gccgctggac 3541 ctaccaaggc aacgctatgt tctcttgctt ttgtcagcaa gatagccaga tcaatgtcga 3601 tcgtggctgg ctcgaagata cctgcaagaa tgtcattgcg ctgccattct ccaaattgca 3661 gttcgcgctt agctggataa cgccacggaa tgatgtcgtc gtgcacaaca atggtgactt 3721 ctacagcgcg gagaatctcg ctctctccag gggaagccga agtttccaaa aggtcgttga 3781 tcaaagctcg ccgcgttgtt tcatcaagcc ttacggtcac cgtaaccagc aaatcaatat 3841 cactgtgtgg cttcaggccg ccatccactg cggagccgta caaatgtacg gccagcaacg 3901 tcggttcgag atggcgctcg atgacgccaa ctacctctga tagttgagtc gatacttcgg 3961 cgatcaccgc ttccctcata ctcttccttt ttcaatatta ttgaagcatt tatcagggtt 4021 attgtctcat gagcggatac atatttgaat gtatttagaa aaataaacaa atagctagct 4081 cactcggtcg ctacgctccg ggcgtgagac tgcggcgggc gctgcggaca catacaaagt 4141 tacccacaga ttccgtggat aagcagggga ctaacatgtg aggcaaaaca gcagggccgc 4201 gccggtggcg tttttccata ggctccgccc tcctgccaga gttcacataa acagacgctt 4261 ttccggtgca tctgtgggag ccgtgaggct caaccatgaa tctgacagta cgggcgaaac 4321 ccgacaggac ttaaagatcc ccaccgtttc cggcgggtcg ctccctcttg cgctctcctg 4381 ttccgaccct gccgtttacc ggatacctgt tccgcctttc tcccttacgg gaagtgtggc 4441 gctttctcat agctcacaca ctggtatctc ggctcggtgt aggtcgttcg ctccaagctg 4501 ggctgtaagc aagaactccc cgttcagccc gactgctgcg ccttatccgg taactgttca 4561 cttgagtcca acccggaaaa gcacggtaaa acgccactgg cagcagccat tggtaactgg 4621 gagttcgcag aggatttgtt tagctaaaca cgcggttgct cttgaagtgt gcgccaaagt 4681 ccggctacac tggaaggaca gatttggttg ctgtgctctg cgaaagccag ttaccacggt 4741 taagcagttc cccaactgac ttaaccttcg atcaaaccac ctccccaggt ggttttttcg 4801 tttacagggc aaaagattac gcgcagaaaa aaaggatctc aagaagatcc tttgatcttt 4861 tctactgaac cgctctagat ttcagtgcaa tttatctctt caaatgtagc acctgaagtc 4921 agccccatac gatataagtt gtaattctca tgttagtcat gccccgcgcc caccggaagg 4981 agctgactgg gttgaaggct ctcaagggca tcggtcgaga tcccggtgcc taatgagtga 5041 gctaacttac attaattgcg ttgcgctcac tgcccgcttt ccagtcggga aacctgtcgt 5101 gccagctgca ttaatgaatc ggccaacgcg cggggagagg cggtttgcgt attgggcgcc 5161 agggtggttt ttcttttcac cagtgagacg ggcaacagct gattgccctt caccgcctgg 5221 ccctgagaga gttgcagcaa gcggtccacg ctggtttgcc ccagcaggcg aaaatcctgt 5281 ttgatggtgg ttaacggcgg gatataacat gagctgtctt cggtatcgtc gtatcccact 5341 accgagatgt ccgcaccaac gcgcagcccg gactcggtaa tggcgcgcat tgcgcccagc 5401 gccatctgat cgttggcaac cagcatcgca gtgggaacga tgccctcatt cagcatttgc 5461 atggtttgtt gaaaaccgga catggcactc cagtcgcctt cccgttccgc tatcggctga 5521 atttgattgc gagtgagata tttatgccag ccagccagac gcagacgcgc cgagacagaa 5581 cttaatgggc ccgctaacag cgcgatttgc tggtgaccca atgcgaccag atgctccacg 5641 cccagtcgcg taccgtcttc atgggagaaa ataatactgt tgatgggtgt ctggtcagag 5701 acatcaagaa ataacgccgg aacattagtg caggcagctt ccacagcaat ggcatcctgg 5761 tcatccagcg gatagttaat gatcagccca ctgacgcgtt gcgcgagaag attgtgcacc 5821 gccgctttac aggcttcgac gccgcttcgt tctaccatcg acaccaccac gctggcaccc 5881 agttgatcgg cgcgagattt aatcgccgcg acaatttgcg acggcgcgtg cagggccaga 5941 ctggaggtgg caacgccaat cagcaacgac tgtttgcccg ccagttgttg tgccacgcgg 6001 ttgggaatgt aattcagctc cgccatcgcc gcttccactt tttcccgcgt tttcgcagaa 6061 acgtggctgg cctggttcac cacgcgggaa acggtctgat aagagacacc ggcatactct 6121 gcgacatcgt ataacgttac tggtttcaca ttcaccaccc tgaattgact ctcttccggg 6181 cgctatcatg ccataccgcg aaaggttttg cgccattcga tggtgtccgg gatctcgacg 6241 ctcggtaccc ccctgttttg gcggatgaga gaagattttc agcctgatac agattaaatc 6301 agaacgcaga agcggtctga taaaacagaa tttgcctggc ggcagtagcg cggtggtccc 6361 acctgacccc atgccgaact cagaagtgaa acgccgtagc gccgatggta gtgtggggtc 6421 tccccatgcg agagtaggga actgccaggc atcaaataaa acgaaaggct cagtcgaaag 6481 actgggcctt tcgttttatc tgttgtttgc gctagcggat cctgtttttt tgatcgtttt 6541 cacaaaaatg gaagtacaca gtcttgacag ggaaaatgca gcggcgtagc ttttatgccg 6601 tatataaaaa cggcgtttat atgtacggta tttattttta acttattgtt ttaaaagtca 6661 aagaggattt tataatggtg agcaagggcg aggaggataa catggccatc atcaaggagt 6721 tcatgcgctt caaggtgcac atggagggct ccgtgaacgg ccacgagttc gagatcgagg 6781 gcgagggcga gggccgcccc tacgagggca cccagaccgc caagctgaag gtgaccaagg 6841 gtggccccct gcccttcgcc tgggacatcc tgtcccctca gttcatgtac ggctccaagg 6901 cctacgtgaa gcaccccgcc gacatccccg actacttgaa gctgtccttc cccgagggct 6961 tcaagtggga gcgcgtgatg aacttcgagg acggcggcgt ggtgaccgtg acccaggact 7021 cctccctgca ggacggcgag ttcatctaca aggtgaagct gcgcggcacc aacttcccct 7081 ccgacggccc cgtaatgcag aagaagacca tgggctggga ggcctcctcc gagcggatgt 7141 accccgagga cggcgccctg aagggcgaga tcaagcagag gctgaagctg aaggacggcg 7201 gccactacga cgctgaggtc aagaccacct acaaggccaa gaagcccgtg cagctgcccg 7261 gcgcctacaa cgtcaacatc aagttggaca tcacctccca caacgaggac tacaccatcg 7321 tggaacagta cgaacgcgcc gagggccgcc actccaccgg cggcatggac gagctgtaca 7381 agtaaagatc tctgttttgg cggatgagag aagattttca gcctgataca gattaaatca 7441 gaacgcagaa gcggtctgat aaaacagaat ttgcctggcg gcagtagcgc ggtggtccca 7501 cctgacccca tgccgaactc agaagtgaaa cgccgtagcg ccgatggtag tgtggggtct 7561 ccccatgcga gagtagggaa ctgccaggca tcaaataaaa cgaaaggctc agtcgaaaga 7621 ctgggccttt cgttttatct gttgtttgcg ctagcggatc cgcctatgca gcgacaaata 7681 ttgatagcct gaatcagtat tga //
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pLEVI(408)-ColE-iLight-msfGFP载体质粒应用举例
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